Chloroplast Genetics References.


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1. Baldauf, S.L. and Palmer, J.D. (1990) Evolutionary transfer of the chloroplast tufA gene to the nucleus. NAture. 344:262-265

2. Barbrook, A.C., Lockhart, P.J. and Howe, C.J. (1998) Phylogenetic analysis of plastid origins based on secA sequences. Current Genetics. 34:336-341

3. Bennoun, P. and Delosme, M. (1999) Chloroplast suppressors that act on a mitchondrial mutation in Chlamydomonas reinhardtii. Mol. Gen. Genet. 262:85-89

4. Birky Jr., W.C. (1995) Uniparental inheritance of mitochondrial and chloroplast genes: mechanisms and evolution. PNAS. 92:11331-11338

5. Blanchard, J.L. and Schmidt, G.W. (1995) Pervasive migration of organellar DNA to the nucleus in plants. J. Mol. Evol. 41:397-406

6. Brennicke, A., Grohmann, L., Hiesel, R., Knoop, V. and Schuster, W. (1993) The mitochondrial genome on its way to the nucleus: different stages of gene transfer in higher plants. FEBS. 325:140-145

7. Chen, X., Simpson, C.L., Kindle, K.L. and Stern, D.B. (1997) A dominant mutation in Chlamydomonas reinhardtii nuclear gene SIM30 suppresses translational defects caused by initiation codon mutations in chloroplast genes. Genetics. 145:935-943

8. Clegg, M.T. (1993) Chloroplast gene sequences and the study of plant evolution. PNAS USA. 90:363-367

9. Clegg, M.T., Cummings, M.P. and Durbin, M. (1997) The evolution of plant nuclear genes. PNAS USA. 94:7791-7798

10. Clegg, M.T., Gaut, B.S., Learn Jr., G.H. and Morton, B. (1994) Rates and patterns of chloroplast DNA evolution. PNAS USA. 6795-6801

11. Curtis, S. and Clegg, M.T. (1984) Molecular evolution of chloroplast DNA sequences. Mol. Biol. Evol. 1:291-301

12. Delwiche, C.F., Kuhsel, M. and Palmer, J.D. (1995) Phylogenetic analysis of tufA sequences indicates a cyanobacterial origin of all plastids. Molecular Phylogenetics and Evolution. 4:110-128

13. Douglas, S.E., Murphy, C.A. Spencer, D.F. and Gray, M. (1991) Cryptomonad algae are evolutionary chimaeras of two phylogenetically distinct unicellular eukaryotes. Nature. 350:148-151

14. Frey,J.E. (1999) Genetic flexibility of plant chloroplasts. Nature. 398:115-116

15. Gantt, J.S., Baldauf, S.L. Calie, P.J., Weeden, N.F. and Palmer, J.D. (1991) Transfer of rpl22 to the nuclues greatly preceded its loss from the chloroplast and involved the gain of an intron. EMBO J. 10:3073-3078

16. Golenberg, E.M., Clegg, M.T., Durbin, M.L., Doebley, J. Ma, D.P. (1993) Evolution of a noncoding region of the chloroplast genome. Molecular Phylogenetics and Evolution. 2:52-64

17. Gray, M. (1989) The evolutionary origins of organelles. TIG. 5:

18. Joyce, P.B.M. and Gray, M.W. (1989) Chloroplast-like transfer RNA genes expressed in wheat mitochondria. Nucleic Acids research. 17:5461-5476.

19. Lockhart, P.J., Howe, C.J., Bryant, D.A., Beanland, T.J. and Larkum, A.W.D. (1992) Substitutional bias confounds inference of cyanelle origins from sequence data. J. Mol. Evol. 34:153-162

20. Martin, W. and Hermann, R.G. (1998) Gene transfer from organelles to the nucleus: how much, what happens and why? Plant Physiology. 118:9-17

21. Martin, W., Stoebe, B., Goremykin, V., Hansmann, S., Hasegawa, M. and Kowallik, K. (1998) Gene transfer to the nucleus and the evolution of chloroplasts. Nature. 393:162-165

22. McFadden, G. (1999) Ever decreasing circles. Nature. 400:119-120

23. Menaud, B., Marechal-Drouard, C., Sakamoto, W., Dietrich, A. and Wintz, H. (1998) A single gene of chloroplast origin codes for mitochondrial and chloroplastic methionyl-tRNA synthetase in Arabidopsis thaliana. PNAS USA. 95:11014-11019

24. Morton, B.R. (1995) Neighbouring base composition and transversion/transition bias in a comparison of rice and maize chloroplast noncoding regions. PNAS USA. 92:9717-9721

25. Morton, B.R. (1999) Strand asymmetry and codon bias in the chloroplast genome of Euglena gracilis. PNAS USA. 96:5123-5128

26. Nierzwicki-Bauer, S.A., Curtis, S.E. and Haselkorn, R. (1984) Cotranscriptino of genes encoding the small and large subunits of ribulose-1,5-bisphosphate carboxylase in the cyanobacterium Anabaena 7120. PNAS USA. 81:5961-5965

27. Oliver, J.C., Marin, A. and Zapater, M. (1989) Chloroplast genes transferred to the nuclear plant genome have adjusted to nuclear base composition and codon usage. Nucleic Acids Research. 18:65-73

28. Penny, D. and O'Kelly, C.J. (1991) Seeds of a universal tree. Nature. 350:106-107

29. Race, H., Hermann, R.G. and Martin, W. (1999) Why have organelles retained genomes? TIG. 15:364-370

30. Scott, S.E. and Wilkinson, M. (1999) Low probability of chloroplast movement from oilseed rape (Brassica napus) into wild Brassica rapa. Nature Biotechnology. 17:390-392

31. Stewart Jr., C.N., Adang, M.J., All, J.N., Raymer, P.L., Ramachandran, S. and Parrott, W.A. (1996) Insect control and dosage effects in transgenic canola containing a synthetic Bacillus thuringiensis cryIAc gene. Plant Physiology. 112:115-120

32. Stiller, J.W. and Hall, B.D. (1997) The origin of red algae: implications for plastid evolution. PNAS USA. 94:4520-4525

33. Stoebe, B. and Kowallik, K.L. (1999) Gene-cluster analysis in chloroplast genomics. TIG. 15:344-347

34. Strepp, R., Scholz, S., Kruse, S., Speth, V., and Reski, R. (1998) Plant nuclear gene knockout reveals a role in plastid division for the homolog of the bacterial cell division protein FtsZ, and ancestral tubulin. PNAS. 95:4368-4373

35. Thorsness, P.E. and Fox, T.D. (1990) Escape of DNA from mitochondria to the nucleus in Saccharomyces cerevisae. Nature. 346:376-379

36. Thorsness, P.E. and Fox, T.D. (1990) Nuclear mutations in Saccharomyces cerevisiae that affect the escape of DNA from mitochondria to the nucleus. Genetics. 134:21-28

37. Turmel, M., Otis, C. and Lemieux, C. (1999) The complete chloroplast DNA sequence of the green alga Nephrselmis olivacea: insights into the architecture of ancestral chloroplast genomes. PNAS USA. 96:10248-10253

38. Wakasugi, T., Nagai, T., ... Yoshinaga, K. and Sugiura, M. (1997) Complete nucleotide sequence of the chloroplast genome from the green alga Chlorella vulgaris: The existence of genes possibly involved in chloroplast division. PNAS. 94:5967-5972

39. Wolf, K.H., Li, W-H and Sharp, P. (1987) Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. PNAS USA. 84:9054-9058

40. Wu, H.Y. and Kuchka, M.R. (1995) A nuclear suppressor overcomes defects in the synthesis of the chloroplast psbD geneproduct caused by mutations in two distinct nuclear genes of Chlamydomonas. Current Genetics. 27:263-269

41. Zhang, Z., Green, B.R. and Cavalier-Smith, T. (1999) Single gene circles in dinoflagellate chloroplast genomes. Nature. 400:155-159

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